IL_5MEI_348
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- 5MEI|1|AR|U|682
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_348 not in the Motif Atlas
- Homologous match to IL_5TBW_022
- Geometric discrepancy: 0.0879
- The information below is about IL_5TBW_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MEI|1|AR|G|680
5MEI|1|AR|U|681
5MEI|1|AR|U|682
5MEI|1|AR|U|683
5MEI|1|AR|G|684
*
5MEI|1|AR|C|696
5MEI|1|AR|A|697
5MEI|1|AR|U|698
5MEI|1|AR|A|699
5MEI|1|AR|C|700
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DC
- 60S ribosomal protein L28
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