IL_5MEI_367

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_367 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.0785

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5MEI|1|AR|A|1006
5MEI|1|AR|U|1007
5MEI|1|AR|U|1008
5MEI|1|AR|A|1009
*
5MEI|1|AR|U|1041
5MEI|1|AR|U|1042
5MEI|1|AR|C|1043
5MEI|1|AR|U|1044

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L5

Chain CL

60S ribosomal protein L10