IL_5MEI_400

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAUAAUG*CUAUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|AR|G|1882
5MEI|1|AR|A|1883
5MEI|1|AR|A|1884
5MEI|1|AR|U|1885
5MEI|1|AR|A|1886
5MEI|1|AR|A|1887
5MEI|1|AR|U|1888
5MEI|1|AR|G|1889
*
5MEI|1|AR|C|2346
5MEI|1|AR|U|2347
5MEI|1|AR|A|2348
5MEI|1|AR|U|2349
5MEI|1|AR|C|2350

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A

Chain DF

60S ribosomal protein L31-A