IL_5MEI_426

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

5MEI|1|AR|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_426 not in the Motif Atlas

Homologous match to IL_5TBW_101

Geometric discrepancy: 0.1436

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5MEI|1|AR|G|2770
5MEI|1|AR|U|2771
5MEI|1|AR|C|2772
5MEI|1|AR|C|2773
*
5MEI|1|AR|G|2787
5MEI|1|AR|C|2788

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain CS

60S ribosomal protein L18-A

Chain DC

60S ribosomal protein L28

Chain DQ

60S ribosomal protein L42-A