IL_5MEI_444

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

5MEI|1|AR|U|3078, 5MEI|1|AR|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_444 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.1126

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5MEI|1|AR|C|3063
5MEI|1|AR|U|3064
*
5MEI|1|AR|A|3077
5MEI|1|AR|U|3078
5MEI|1|AR|U|3079
5MEI|1|AR|G|3080

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DF

60S ribosomal protein L31-A