IL_5MEI_459

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

5MEI|1|AR|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_459 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2614

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5MEI|1|AR|G|3340
5MEI|1|AR|U|3341
5MEI|1|AR|A|3342
*
5MEI|1|AR|U|3363
5MEI|1|AR|C|3364

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A