IL_5MEI_461

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

5MEI|1|AR|U|3354, 5MEI|1|AR|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_461 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.283

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5MEI|1|AR|G|3348
5MEI|1|AR|C|3349
5MEI|1|AR|C|3350
*
5MEI|1|AR|G|3353
5MEI|1|AR|U|3354
5MEI|1|AR|U|3355
5MEI|1|AR|G|3356
5MEI|1|AR|U|3357

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CW

60S ribosomal protein L22-A

Chain s8

40S ribosomal protein S8-A