IL_5MEI_470

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAU*AUCGA

Length

9 nucleotides

Bulged bases

5MEI|1|AT|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|AT|U|64
5MEI|1|AT|A|65
5MEI|1|AT|A|66
5MEI|1|AT|U|67
*
5MEI|1|AT|A|92
5MEI|1|AT|U|93
5MEI|1|AT|C|94
5MEI|1|AT|G|95
5MEI|1|AT|A|96

Current chains

Chain AT

5.8S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DA

60S ribosomal protein L26-A

Chain DJ

60S ribosomal protein L35-A

Chain DL

60S ribosomal protein L37-A