IL_5MEI_481

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCGAC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_481 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3287

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5MEI|1|6|U|185
5MEI|1|6|C|186
5MEI|1|6|G|187
5MEI|1|6|A|188
5MEI|1|6|C|189
*
5MEI|1|6|G|196
5MEI|1|6|A|197
5MEI|1|6|A|198
5MEI|1|6|G|199
5MEI|1|6|A|200

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A