IL_5MEI_497

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGGAUCUG*CGGAGAAU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|A|A|1678
5MEI|1|A|G|1679
5MEI|1|A|G|1680
5MEI|1|A|A|1681
5MEI|1|A|U|1682
5MEI|1|A|C|1683
5MEI|1|A|U|1684
5MEI|1|A|G|1685
*
5MEI|1|A|C|1716
5MEI|1|A|G|1717
5MEI|1|A|G|1718
5MEI|1|A|A|1719
5MEI|1|A|G|1720
5MEI|1|A|A|1721
5MEI|1|A|A|1722
5MEI|1|A|U|1723

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A