IL_5MEI_498

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCCGGGG*CCUUGAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|AR|G|1013
5MEI|1|AR|U|1014
5MEI|1|AR|U|1015
5MEI|1|AR|C|1016
5MEI|1|AR|C|1017
5MEI|1|AR|G|1018
5MEI|1|AR|G|1019
5MEI|1|AR|G|1020
5MEI|1|AR|G|1021
*
5MEI|1|AR|C|1031
5MEI|1|AR|C|1032
5MEI|1|AR|U|1033
5MEI|1|AR|U|1034
5MEI|1|AR|G|1035
5MEI|1|AR|A|1036
5MEI|1|AR|C|1037

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L5

Chain CM

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B