IL_5MEI_508
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5MEI|1|1|U|1716, 5MEI|1|1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_508 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.0785
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5MEI|1|1|C|1711
5MEI|1|1|G|1712
5MEI|1|1|G|1713
5MEI|1|1|A|1714
5MEI|1|1|A|1715
5MEI|1|1|U|1716
5MEI|1|1|U|1717
*
5MEI|1|1|G|1727
5MEI|1|1|G|1728
5MEI|1|1|A|1729
5MEI|1|1|G|1730
5MEI|1|1|A|1731
5MEI|1|1|U|1732
5MEI|1|1|G|1733
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L27-A
- Chain AD
- 60S ribosomal protein L30
- Chain AQ
- 60S ribosomal protein L43-A
- Chain O
- 40S ribosomal protein S13
- Chain z
- 60S ribosomal protein L19-A
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