IL_5MEI_518
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5MEI|1|A|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_518 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3125
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5MEI|1|A|G|751
5MEI|1|A|A|752
5MEI|1|A|A|753
5MEI|1|A|A|754
5MEI|1|A|A|755
5MEI|1|A|A|756
5MEI|1|A|A|757
5MEI|1|A|U|758
5MEI|1|A|U|759
*
5MEI|1|A|A|791
5MEI|1|A|U|792
5MEI|1|A|A|793
5MEI|1|A|U|794
5MEI|1|A|U|795
5MEI|1|A|A|796
5MEI|1|A|G|797
5MEI|1|A|C|798
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain K
- 40S ribosomal protein S9-A
- Chain M
- 40S ribosomal protein S11-A
- Chain X
- 40S ribosomal protein S22-A
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