IL_5MEI_526
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUU*AGUGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_526 not in the Motif Atlas
- Homologous match to IL_8P9A_467
- Geometric discrepancy: 0.1399
- The information below is about IL_8P9A_467
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5MEI|1|AR|C|175
5MEI|1|AR|G|176
5MEI|1|AR|U|177
5MEI|1|AR|U|178
*
5MEI|1|AR|A|238
5MEI|1|AR|G|239
5MEI|1|AR|U|240
5MEI|1|AR|G|241
5MEI|1|AR|C|242
5MEI|1|AR|G|243
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CN
- 60S ribosomal protein L13-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DL
- 60S ribosomal protein L37-A
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