IL_5MGP_010

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUG*CAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_010 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2247

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5MGP|1|A|U|284
5MGP|1|A|G|285
5MGP|1|A|U|286
5MGP|1|A|G|287
*
5MGP|1|A|C|353
5MGP|1|A|A|354
5MGP|1|A|U|355
5MGP|1|A|G|356

Current chains

Chain A

23S ribosomal RNA

Nearby chains