IL_5MGP_060

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_060 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5MGP|1|A|C|1526
5MGP|1|A|G|1527
5MGP|1|A|A|1528
5MGP|1|A|G|1529
*
5MGP|1|A|U|1542
5MGP|1|A|G|1543
5MGP|1|A|A|1544
5MGP|1|A|A|1545
5MGP|1|A|G|1546

Current chains

Chain A

23S ribosomal RNA

Nearby chains