IL_5MGP_064

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_064 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1469

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5MGP|1|A|U|1720
5MGP|1|A|G|1721
5MGP|1|A|A|1722
5MGP|1|A|G|1723
5MGP|1|A|G|1724
*
5MGP|1|A|U|1736
5MGP|1|A|G|1737
5MGP|1|A|G|1738
5MGP|1|A|A|1739
5MGP|1|A|G|1740

Current chains

Chain A

23S ribosomal RNA

Nearby chains