IL_5MGP_080

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

5MGP|1|A|C|2164, 5MGP|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_080 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5343

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5MGP|1|A|G|2124
5MGP|1|A|G|2125
5MGP|1|A|A|2126
5MGP|1|A|G|2127
5MGP|1|A|G|2128
*
5MGP|1|A|C|2160
5MGP|1|A|C|2161
5MGP|1|A|G|2162
5MGP|1|A|A|2163
5MGP|1|A|C|2164
5MGP|1|A|C|2165
5MGP|1|A|U|2166
5MGP|1|A|U|2167
5MGP|1|A|G|2168
5MGP|1|A|A|2169
5MGP|1|A|A|2170
5MGP|1|A|A|2171
5MGP|1|A|U|2172
5MGP|1|A|A|2173
5MGP|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains