IL_5MGP_158

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

5MGP|1|a|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_158 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1373

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

5MGP|1|a|G|1124
5MGP|1|a|U|1125
5MGP|1|a|U|1126
5MGP|1|a|G|1127
5MGP|1|a|C|1128
*
5MGP|1|a|G|1144
5MGP|1|a|A|1145
5MGP|1|a|A|1146
5MGP|1|a|C|1147
5MGP|1|a|U|1148
5MGP|1|a|C|1149

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10