IL_5MGP_177
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*UUAC
- Length
- 7 nucleotides
- Bulged bases
- 5MGP|1|A|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MGP_177 not in the Motif Atlas
- Geometric match to IL_5TBW_145
- Geometric discrepancy: 0.2952
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5MGP|1|A|G|880
5MGP|1|A|G|881
5MGP|1|A|G|882
*
5MGP|1|A|U|894
5MGP|1|A|U|895
5MGP|1|A|A|896
5MGP|1|A|C|897
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: