IL_5MLC_003

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAG*CAGAGAUC

Length

13 nucleotides

Bulged bases

5MLC|1|A|A|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_003 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.2267

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

5MLC|1|A|G|80
5MLC|1|A|G|81
5MLC|1|A|G|82
5MLC|1|A|A|83
5MLC|1|A|G|84
*
5MLC|1|A|C|96
5MLC|1|A|A|97
5MLC|1|A|G|98
5MLC|1|A|A|99
5MLC|1|A|G|100
5MLC|1|A|A|101
5MLC|1|A|U|102
5MLC|1|A|C|103

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain W

50S ribosomal protein L24, chloroplastic

Chain Z

50S ribosomal protein L29, chloroplastic