IL_5MLC_024

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*CACUC

Length

8 nucleotides

Bulged bases

5MLC|1|A|G|787, 5MLC|1|A|A|799, 5MLC|1|A|C|800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_024 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0749

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5MLC|1|A|G|786
5MLC|1|A|G|787
5MLC|1|A|G|788
*
5MLC|1|A|C|798
5MLC|1|A|A|799
5MLC|1|A|C|800
5MLC|1|A|U|801
5MLC|1|A|C|802

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain D

50S ribosomal protein L2, chloroplastic

Chain U

50S ribosomal protein L22, chloroplastic