IL_5MLC_025

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_025 not in the Motif Atlas

Geometric match to IL_8GLP_064

Geometric discrepancy: 0.372

The information below is about IL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|C|848
5MLC|1|A|A|849
5MLC|1|A|G|850
*
5MLC|1|A|C|967
5MLC|1|A|C|968
5MLC|1|A|A|969
5MLC|1|A|G|970

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 5

50S ribosomal protein L35, chloroplastic

Chain N

50S ribosomal protein L15, chloroplastic