IL_5MLC_026
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGGUAA*UGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MLC_026 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.104
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MLC|1|A|G|866
5MLC|1|A|G|867
5MLC|1|A|G|868
5MLC|1|A|G|869
5MLC|1|A|U|870
5MLC|1|A|A|871
5MLC|1|A|A|872
*
5MLC|1|A|U|924
5MLC|1|A|G|925
5MLC|1|A|A|926
5MLC|1|A|A|927
5MLC|1|A|U|928
5MLC|1|A|A|929
5MLC|1|A|C|930
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L16, chloroplastic
- Chain X
- 50S ribosomal protein L27, chloroplastic
Coloring options: