IL_5MLC_048

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAAG*CAC

Length

8 nucleotides

Bulged bases

5MLC|1|A|A|1353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_048 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.2055

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5MLC|1|A|G|1340
5MLC|1|A|C|1341
5MLC|1|A|A|1342
5MLC|1|A|A|1343
5MLC|1|A|G|1344
*
5MLC|1|A|C|1352
5MLC|1|A|A|1353
5MLC|1|A|C|1354

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain U

50S ribosomal protein L22, chloroplastic