IL_5MLC_056

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAG*CGAGUA

Length

11 nucleotides

Bulged bases

5MLC|1|A|G|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_056 not in the Motif Atlas

Geometric match to IL_5TBW_071

Geometric discrepancy: 0.3831

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5MLC|1|A|U|1486
5MLC|1|A|C|1487
5MLC|1|A|A|1488
5MLC|1|A|A|1489
5MLC|1|A|G|1490
*
5MLC|1|A|C|1554
5MLC|1|A|G|1555
5MLC|1|A|A|1556
5MLC|1|A|G|1557
5MLC|1|A|U|1558
5MLC|1|A|A|1559

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 7

PSRP5alpha, chloroplastic