IL_5MLC_099

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MLC_099 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1106

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5MLC|1|A|G|2657
5MLC|1|A|A|2658
5MLC|1|A|G|2659
*
5MLC|1|A|C|2790
5MLC|1|A|C|2791
5MLC|1|A|C|2792

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain E

50S ribosomal protein L3, chloroplastic

Chain L

50S ribosomal protein L13, chloroplastic