IL_5MLC_110
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAUCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MLC_110 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.1966
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
5MLC|1|B|A|35
5MLC|1|B|A|36
5MLC|1|B|U|37
5MLC|1|B|C|38
5MLC|1|B|C|39
*
5MLC|1|B|G|45
5MLC|1|B|A|46
5MLC|1|B|A|47
5MLC|1|B|C|48
5MLC|1|B|U|49
Current chains
- Chain B
- 5S ribosomal RNA, chloroplastic
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5, chloroplastic
- Chain Q
- 50S ribosomal protein L18, chloroplastic
Coloring options: