IL_5MMI_003

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAG*CAGAGAUC

Length

13 nucleotides

Bulged bases

5MMI|1|A|A|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_003 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1755

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

5MMI|1|A|G|80
5MMI|1|A|G|81
5MMI|1|A|G|82
5MMI|1|A|A|83
5MMI|1|A|G|84
*
5MMI|1|A|C|96
5MMI|1|A|A|97
5MMI|1|A|G|98
5MMI|1|A|A|99
5MMI|1|A|G|100
5MMI|1|A|A|101
5MMI|1|A|U|102
5MMI|1|A|C|103

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

plastid ribosomal protein uL24c

Chain Z

plastid ribosomal protein uL29c