IL_5MMI_004

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUC*GGCAA

Length

8 nucleotides

Bulged bases

5MMI|1|A|C|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_004 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3368

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

5MMI|1|A|U|136
5MMI|1|A|U|137
5MMI|1|A|C|138
*
5MMI|1|A|G|156
5MMI|1|A|G|157
5MMI|1|A|C|158
5MMI|1|A|A|159
5MMI|1|A|A|160

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

plastid ribosomal protein bL28c

Chain Z

plastid ribosomal protein uL29c