IL_5MMI_011

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUCG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_011 not in the Motif Atlas

Geometric match to IL_7RQB_060

Geometric discrepancy: 0.2641

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5MMI|1|A|C|292
5MMI|1|A|G|293
5MMI|1|A|U|294
5MMI|1|A|C|295
5MMI|1|A|G|296
*
5MMI|1|A|C|363
5MMI|1|A|U|364
5MMI|1|A|A|365
5MMI|1|A|G|366

Current chains

Chain A

23S ribosomal RNA

Nearby chains