IL_5MMI_032

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_032 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.2375

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5MMI|1|A|U|886
5MMI|1|A|G|887
5MMI|1|A|C|888
5MMI|1|A|G|889
*
5MMI|1|A|C|907
5MMI|1|A|A|908
5MMI|1|A|A|909
5MMI|1|A|A|910

Current chains

Chain A

23S ribosomal RNA

Nearby chains