IL_5MMI_037

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

5MMI|1|A|U|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_037 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.1891

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5MMI|1|A|A|1039
5MMI|1|A|U|1040
5MMI|1|A|G|1041
*
5MMI|1|A|C|1176
5MMI|1|A|U|1177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein 6, chloroplastic

Chain K

50S ribosomal protein L13, chloroplastic

Chain R

50S ribosomal protein L20, chloroplastic