IL_5MMI_039
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUAAAG*CGAAGAUGAACGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5MMI|1|A|A|1155, 5MMI|1|A|U|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_039 not in the Motif Atlas
- Homologous match to IL_7A0S_037
- Geometric discrepancy: 0.4793
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5MMI|1|A|G|1052
5MMI|1|A|A|1053
5MMI|1|A|U|1054
5MMI|1|A|A|1055
5MMI|1|A|A|1056
5MMI|1|A|A|1057
5MMI|1|A|G|1058
*
5MMI|1|A|C|1152
5MMI|1|A|G|1153
5MMI|1|A|A|1154
5MMI|1|A|A|1155
5MMI|1|A|G|1156
5MMI|1|A|A|1157
5MMI|1|A|U|1158
5MMI|1|A|G|1159
5MMI|1|A|A|1160
5MMI|1|A|A|1161
5MMI|1|A|C|1162
5MMI|1|A|G|1163
5MMI|1|A|G|1164
5MMI|1|A|G|1165
5MMI|1|A|G|1166
5MMI|1|A|C|1167
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L36, chloroplastic
- Chain 7
- 50S ribosomal protein 6, chloroplastic
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- plastid ribosomal protein uL3c
- Chain K
- 50S ribosomal protein L13, chloroplastic
- Chain N
- 50S ribosomal protein L16, chloroplastic
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