IL_5MMI_044

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5MMI|1|A|A|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_044 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.2015

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MMI|1|A|G|1115
5MMI|1|A|A|1116
5MMI|1|A|G|1117
5MMI|1|A|U|1118
5MMI|1|A|G|1119
*
5MMI|1|A|C|1128
5MMI|1|A|U|1129
5MMI|1|A|C|1130

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36, chloroplastic

Chain J

50S ribosomal protein L11, chloroplastic