IL_5MMI_045

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGU*AGCG

Length

7 nucleotides

Bulged bases

5MMI|1|A|G|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_045 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.0649

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5MMI|1|A|C|1217
5MMI|1|A|G|1218
5MMI|1|A|U|1219
*
5MMI|1|A|A|1268
5MMI|1|A|G|1269
5MMI|1|A|C|1270
5MMI|1|A|G|1271

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

plastid ribosomal protein uL4c

Chain M

plastid ribosomal protein uL15c

Chain R

50S ribosomal protein L20, chloroplastic