IL_5MMI_046
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUUAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 5MMI|1|A|U|1226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_046 not in the Motif Atlas
- Geometric match to IL_5J7L_022
- Geometric discrepancy: 0.2812
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5MMI|1|A|U|1224
5MMI|1|A|G|1225
5MMI|1|A|U|1226
5MMI|1|A|U|1227
5MMI|1|A|A|1228
5MMI|1|A|G|1229
*
5MMI|1|A|C|1259
5MMI|1|A|G|1260
5MMI|1|A|A|1261
5MMI|1|A|A|1262
5MMI|1|A|G|1263
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- plastid ribosomal protein uL4c
- Chain M
- plastid ribosomal protein uL15c
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