IL_5MMI_062

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAAG*CAAUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_062 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5543

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5MMI|1|A|C|1493
5MMI|1|A|G|1494
5MMI|1|A|C|1495
5MMI|1|A|A|1496
5MMI|1|A|A|1497
5MMI|1|A|G|1498
*
5MMI|1|A|C|1547
5MMI|1|A|A|1548
5MMI|1|A|A|1549
5MMI|1|A|U|1550
5MMI|1|A|G|1551

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

plastid ribosomal protein cL37, PSRP5