IL_5MMI_064

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAAC*GGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_064 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.109

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5MMI|1|A|G|1687
5MMI|1|A|A|1688
5MMI|1|A|C|1689
5MMI|1|A|A|1690
5MMI|1|A|A|1691
5MMI|1|A|C|1692
*
5MMI|1|A|G|2018
5MMI|1|A|G|2019
5MMI|1|A|C|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

plastid ribosomal protein uL3c

Chain O

plastid ribosomal protein bL17c

Chain W

4.5S ribosomal RNA