IL_5MMI_065

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_065 not in the Motif Atlas

Homologous match to IL_7A0S_060

Geometric discrepancy: 0.122

The information below is about IL_7A0S_060

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

5MMI|1|A|U|1699
5MMI|1|A|A|1700
5MMI|1|A|A|1701
*
5MMI|1|A|U|2009
5MMI|1|A|C|2010
5MMI|1|A|G|2011

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

plastid ribosomal protein uL3c

Chain L

50S ribosomal protein L14, chloroplastic

Chain Q

50S ribosomal protein L19, chloroplastic