IL_5MMI_068

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5MMI|1|A|G|1735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_068 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.087

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5MMI|1|A|C|1722
5MMI|1|A|G|1723
5MMI|1|A|U|1724
5MMI|1|A|A|1725
5MMI|1|A|A|1726
5MMI|1|A|C|1727
*
5MMI|1|A|G|1732
5MMI|1|A|G|1733
5MMI|1|A|A|1734
5MMI|1|A|G|1735
5MMI|1|A|A|1736
5MMI|1|A|A|1737
5MMI|1|A|G|1738

Current chains

Chain A

23S ribosomal RNA

Nearby chains