IL_5MMI_070

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAAAG*CCAUGUAUG

Length

16 nucleotides

Bulged bases

5MMI|1|A|A|1811, 5MMI|1|A|U|1826, 5MMI|1|A|U|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0908

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5MMI|1|A|C|1808
5MMI|1|A|G|1809
5MMI|1|A|C|1810
5MMI|1|A|A|1811
5MMI|1|A|A|1812
5MMI|1|A|A|1813
5MMI|1|A|G|1814
*
5MMI|1|A|C|1823
5MMI|1|A|C|1824
5MMI|1|A|A|1825
5MMI|1|A|U|1826
5MMI|1|A|G|1827
5MMI|1|A|U|1828
5MMI|1|A|A|1829
5MMI|1|A|U|1830
5MMI|1|A|G|1831

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2, chloroplastic