IL_5MMI_076

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAC*GGGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_076 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.2357

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5MMI|1|A|U|1874
5MMI|1|A|G|1875
5MMI|1|A|A|1876
5MMI|1|A|C|1877
*
5MMI|1|A|G|1888
5MMI|1|A|G|1889
5MMI|1|A|G|1890
5MMI|1|A|A|1891
5MMI|1|A|G|1892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L33, chloroplastic

Chain M

plastid ribosomal protein uL15c