IL_5MMI_096

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_096 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1268

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5MMI|1|A|C|2483
5MMI|1|A|C|2484
5MMI|1|A|A|2485
5MMI|1|A|A|2486
5MMI|1|A|G|2487
*
5MMI|1|A|C|2497
5MMI|1|A|G|2498
5MMI|1|A|A|2499
5MMI|1|A|C|2500
5MMI|1|A|G|2501

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36, chloroplastic

Chain N

50S ribosomal protein L16, chloroplastic