IL_5MMI_097

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5MMI|1|A|G|2593, 5MMI|1|A|A|2594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_097 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0885

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5MMI|1|A|C|2527
5MMI|1|A|U|2528
5MMI|1|A|C|2529
*
5MMI|1|A|G|2591
5MMI|1|A|U|2592
5MMI|1|A|G|2593
5MMI|1|A|A|2594
5MMI|1|A|G|2595

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L32, chloroplastic

Chain D

plastid ribosomal protein uL3c