IL_5MMI_102

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_102 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.1475

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

5MMI|1|A|G|2657
5MMI|1|A|A|2658
5MMI|1|A|G|2659
*
5MMI|1|A|C|2790
5MMI|1|A|C|2791
5MMI|1|A|C|2792

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

plastid ribosomal protein uL3c

Chain K

50S ribosomal protein L13, chloroplastic