IL_5MMI_105
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5MMI|1|A|U|2706
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_105 not in the Motif Atlas
- Geometric match to IL_4V9F_094
- Geometric discrepancy: 0.1739
- The information below is about IL_4V9F_094
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_45790.2
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
5MMI|1|A|U|2704
5MMI|1|A|G|2705
5MMI|1|A|U|2706
5MMI|1|A|A|2707
5MMI|1|A|C|2708
*
5MMI|1|A|G|2736
5MMI|1|A|G|2737
5MMI|1|A|U|2738
5MMI|1|A|A|2739
5MMI|1|A|G|2740
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- plastid ribosomal protein uL3c
- Chain O
- plastid ribosomal protein bL17c
- Chain Q
- 50S ribosomal protein L19, chloroplastic
- Chain W
- 4.5S ribosomal RNA
Coloring options: