IL_5MMI_106

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AAACG

Length

7 nucleotides

Bulged bases

5MMI|1|A|C|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_106 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.0646

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5MMI|1|A|U|2712
5MMI|1|A|U|2713
*
5MMI|1|A|A|2728
5MMI|1|A|A|2729
5MMI|1|A|A|2730
5MMI|1|A|C|2731
5MMI|1|A|G|2732

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

plastid ribosomal protein bL17c

Chain Q

50S ribosomal protein L19, chloroplastic

Chain W

4.5S ribosomal RNA