IL_5MMI_113
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGACGAUAC*GAAAAAUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MMI_113 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1466
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5MMI|1|B|U|72
5MMI|1|B|G|73
5MMI|1|B|A|74
5MMI|1|B|C|75
5MMI|1|B|G|76
5MMI|1|B|A|77
5MMI|1|B|U|78
5MMI|1|B|A|79
5MMI|1|B|C|80
*
5MMI|1|B|G|99
5MMI|1|B|A|100
5MMI|1|B|A|101
5MMI|1|B|A|102
5MMI|1|B|A|103
5MMI|1|B|A|104
5MMI|1|B|U|105
5MMI|1|B|A|106
5MMI|1|B|G|107
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16, chloroplastic
- Chain X
- plastid ribosomal protein bL27c
Coloring options: