IL_5MMI_114

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_114 not in the Motif Atlas

Geometric match to IL_4WF9_106

Geometric discrepancy: 0.119

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

5MMI|1|W|G|42
5MMI|1|W|G|43
*
5MMI|1|W|U|82
5MMI|1|W|C|83
5MMI|1|W|C|84

Current chains

Chain W

4.5S ribosomal RNA

Nearby chains

Chain O

plastid ribosomal protein bL17c

Chain Q

50S ribosomal protein L19, chloroplastic